
Changing the fuel water separator filter in a Mercruiser engine is a task that can be performed by a do-it-yourself boat owner. The fuel filter should be changed annually or after every 100 hours of operation to prevent water trapped in the filter from corroding the filter canister. Before installing a new filter, it is important to treat the fuel with a stabilizer such as Quicksilver Quickstor® to prevent phase separation and stabilize the fuel. This guide will outline the steps for changing a Mercruiser fuel water separator filter, including preparing the work area, removing the old filter, and installing a new one.
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What You'll Learn

Prepare the necessary tools and safety equipment
To prepare for changing your Mercruiser fuel water separator filter, you will need a variety of tools and safety equipment. It is important to have everything ready before you begin the task to ensure a smooth and safe process. Here is a list of the necessary items:
- Adjustable filter wrench: This is a crucial tool for removing the old filter and tightening the new one. It is recommended to have a spare filter wrench on board as well.
- Rags or paper towels: Absorbent rags or towels are needed for cleaning up any spilled fuel and wiping down surfaces. They are also used to apply engine oil to the new filter's gasket or o-ring.
- Clean bucket: A clean bucket is essential for collecting the old fuel drained from the filter. It is important to use a white bucket to easily detect the presence of debris or water in the old fuel.
- Fuel container: You will need a separate container to store the drained fuel safely.
- New fuel filter: Ensure you have the correct replacement fuel filter for your specific Mercruiser engine model.
- New motor oil: A small amount of clean motor oil is required to coat the new filter's gasket or o-ring before installation.
- Protective gear: Wear appropriate safety gear, including gloves and eye protection, to avoid skin contact with fuel and protect yourself from any debris or sparks.
- Ventilation: Work in a well-ventilated area to avoid inhaling fumes. Open hatches or perform the task outdoors if possible.
- Fire safety: Keep a fire extinguisher nearby as a precaution. Avoid any sparks or open flames during the process.
By gathering these tools and safety equipment, you can confidently proceed with changing your Mercruiser fuel water separator filter, ensuring a safe and successful experience.
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Drain the old fuel
To drain the old fuel from your Mercruiser fuel water separator filter, you will need a clean bucket, an adjustable filter wrench, rags or paper towels, and a catch pan.
First, open hatches to ensure ventilation and avoid sparks or open flames. Work outside if possible. Place the catch pan underneath the filter to catch any spillages. Then, open the fuel valve and drain the old fuel from the filter into the clean bucket. Inspect the old fuel for debris or water. If you notice a large amount of dirt or water, schedule another fuel filter replacement after your next boating trip.
Before disposing of the old fuel, check your local regulations for the proper disposal of fuel. You may need to take it to a designated drop-off location or contact a hazardous waste disposal company. Do not pour old fuel down the drain or into storm sewers, as it can contaminate water sources and harm the environment.
It is important to change the fuel filter annually or after every 100 hours of operation. Water trapped in the filter can corrode the filter canister over time, so it is recommended to start each boating season with a fresh filter. Additionally, always treat fresh fuel before storage to prevent corrosion and stabilize the fuel.
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Inspect the old filter
Inspecting the old filter on your Mercruiser fuel water separator is an important step in maintaining your boat's fuel system. Here is a detailed guide on how to do this:
Firstly, locate the fuel filter. For a Mercruiser engine, the fuel filter is typically located under the fuel pump. Cut the stainless lock wire holding the pressure screw in place and loosen the pressure screw with a 10-millimetre wrench. You can then remove the filter bowl. Place a clean bucket underneath to catch any spilled fuel.
Once you have accessed the old filter, carefully remove it from its housing. Be cautious of any residual fuel and avoid skin contact. Pour the remaining fuel from the filter into the clean bucket and inspect it for any debris or water. A large amount of dirt or water in the old fuel is an indicator that your filter is not functioning optimally, and you should schedule another fuel filter replacement soon.
After inspecting the fuel, focus your attention on the filter itself. Check the filter mount bracket and ensure that the old filter O-Ring has been removed. Wipe the filter bracket clean and carefully inspect the surfaces where the new O-ring will need to seal. If you notice any damage to the filter bracket, it is important to replace it before installing the new filter.
By thoroughly inspecting the old filter and its components, you can ensure that your new filter is installed correctly and that your boat's fuel system is maintained in good working condition. Remember to always refer to your Mercruiser engine owner's manual for specific instructions related to your particular engine model.
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Install the new filter
To install the new filter, first, lubricate the rubber gasket with a small amount of engine oil, applied with a rag or your fingertip. This will prevent the gasket from being displaced or damaged when the filter is tightened on the engine. Next, inspect the new filter O-ring and ensure it is correctly positioned. Coat the new O-ring with a little clean motor oil. Pour some clean fuel into the filter for easier start-up. Spin the new filter onto the filter bracket until hand-tight. Use the filter wrench to snug up the filter another half-turn or as recommended by the filter instructions.
Once the new filter is installed, turn the ignition key to the "on" position (not "start") for a few seconds if your engine is fuel-injected. Listen for the faint whine of the electric fuel pump building pressure. Turn the key off when you hear the pump stop, then turn it on again. If the fuel pump starts very briefly, you have filled the filter and the system has pressurised. If the fuel pump runs longer than a second, repeat the off-on cycle a few more times. If your engine is not fuel-injected, consult a local marine mechanic.
After installing the new filter, open the fuel valve and turn on or connect the boat's batteries. Test run the boat and check for fuel leaks immediately.
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Test the new filter
To test the new filter, start by turning on or connecting the boat's batteries. Open the fuel valve, and turn the ignition key to the "on" position (not "start") for a few seconds. Listen for the faint whine of the electric fuel pump building pressure. Once you hear the pump stop, turn the key off and then on again. If the fuel pump starts very briefly, you have successfully filled the filter and pressurized the system. If the fuel pump runs longer than a second, repeat the off-and-on cycle a few more times.
After installing the new filter, always treat fresh fuel before storage. Fill the boat tank when possible, and run the engine briefly to allow the treated fuel to circulate through the entire fuel system. For added protection or short-term storage, use a fuel stabilizer product such as Quicksilver Quickstor® or Quicksilver Quickare®. These products help control corrosion and stabilize fuel for up to 12 months.
Before putting the boat into long-term storage, it is important to take extra precautions. Run the engine, either in the water or on an engine flushing device, to ensure the treated fuel reaches all parts of the fuel system. Apply a rust inhibitor, such as Quicksilver Corrosion Guard Engine Protect, to form a water-resistant barrier and prevent corrosion during long periods of inactivity.
During the testing process, prioritize safety and work in a well-ventilated area. Avoid sparks or open flames, and be cautious around moving parts such as pulleys and belts. Keep spare filters and a filter wrench on board in case of any issues.
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